sounds about right...
body shops don't do much body repair these days, the labour to change the part and paint is less.
they will have no choice on that rear quarter but to do some pulling banging and bondo or cut out the section and put in a new piece.
The door and skirt will likely be changed.
you can try to find a grade A donor door color match on
Car-Part.com--Used Auto Parts Market
did this for a passenger door on my van, didn't require paint, just re-re.
Those plastic color matched skirts are damn expensive and a dealer only part, you might get lucky and find one on car-part.
I think I paid 600 for mine at the dealer after a teenager mishap.