What does your nose say? You've got to put your nose everywhere! My MIL, who's been gone 15 years, had a super sensitive nose! Maybe you can find a friend or family member to sniff around!
Do other family members have the 'burning' eye problem?
You might want to drive car without the carpets and underlayment in place, making it easier to find leaks.
Replace your carpeted mats with rubber mats.
Once you find the 'source', sliced apples make a great natural deodorizer. Just throw them under your seats and forget them. Been there, done that!